BPA genetic monitoring - BPA Genetic Monitoring of Snake River Chinook Salmon and Steelhead
Data Set (DS) | Northwest Fisheries Science Center (NWFSC)GUID: gov.noaa.nmfs.inport:18054 | Updated: August 9, 2022 | Published / External
Summary
Short Citation
Northwest Fisheries Science Center, 2024: BPA genetic monitoring - BPA Genetic Monitoring of Snake River Chinook Salmon and Steelhead, https://www.fisheries.noaa.gov/inport/item/18054.
Full Citation Examples
This is a long-term (30-year) NWFSC Genetics and Evolution Program study to monitor the genetic characteristics and population dynamics of hatchery- and natural-origin Chinook salmon and steelhead in the Snake River Basin, which are both species listed as threatened under the US Endangered Species Act. Genetic tools are used to determine if naturally spawning hatchery fish are influencing the adaptive potential and viability of wild fish in the basin. This work involves long-term annual field work to collect DNA from threatened Chinook salmon and steelhead at numerous locations throughout the Snake and Salmon River Basin and analyze the genetic signatures from the collections in the context of a long-term historical baseline of hatchery production and natural variation in wild salmonid production there.
Initiated in 1989, this study monitors genetic changes associated with hatchery propagation in multiple Snake River sub-basins for Chinook salmon and steelhead. We also derive estimates of reproductive success for individual families and groups of fish. The information obtained from this study directly addresses a critical knowledge gap identified by comanagers, which is: under what conditions does hatchery supplementation provide a sustained contribution to natural production? Co-managers are ODFW, CTUIR, NPT, WDFW, IDFG, and SBT. This type of monitoring work is now an essential part of hatchery reform and the goal of using widespread hatchery propagation in recovery of natural populations.
Distribution Information
-
This is a table of microsatellite genotypes for Little Sheep steelhead included in Berntson et al. 2011. Transactions of the American Fisheries Society 140:685-698. Each locus is represented by two alleles, 3 digits for each allele, where alleles are mobility/size determined, per standard published criteria. Loci are the SPAN suite, described in Blankenship et al. 2011. Transactions of the American Fisheries Society 140:665-684.
-
This is a table of microsatellite genotypes for Little Sheep steelhead included in Berntson et al. 2011. Transactions of the American Fisheries Society 140:685-698. Each locus is represented by two alleles, 3 digits for each allele, where alleles are mobility/size determined, per standard published criteria. Loci are the SPAN suite, described in Blankenship et al. 2011. Transactions of the American Fisheries Society 140:665-684.
NA
Child Items
| Type | Title |
|---|---|
| Entity | Little Sheep Creek steelhead |
Contact Information
Point of Contact
Ewann A Berntson
Ewann.Berntson@noaa.gov
360-871-8333
Metadata Contact
Northwest Fisheries Science Center (NWFSC)
nmfs.nwfsc.metadata@noaa.gov
206-860-3200
NWFSC Home
Extents
-122.5547° W,
-122.5547° E,
47.569° N,
47.569° S
Manchester Research Station
1989-11-01 - Present
Item Identification
| Title: | BPA genetic monitoring - BPA Genetic Monitoring of Snake River Chinook Salmon and Steelhead |
|---|---|
| Short Name: | BPA genetic monitoring (BPA Genetic Monitoring Project) |
| Status: | Completed |
| Creation Date: | 1989-08-01 |
| Publication Date: | 2018-02-15 |
| Abstract: |
This is a long-term (30-year) NWFSC Genetics and Evolution Program study to monitor the genetic characteristics and population dynamics of hatchery- and natural-origin Chinook salmon and steelhead in the Snake River Basin, which are both species listed as threatened under the US Endangered Species Act. Genetic tools are used to determine if naturally spawning hatchery fish are influencing the adaptive potential and viability of wild fish in the basin. This work involves long-term annual field work to collect DNA from threatened Chinook salmon and steelhead at numerous locations throughout the Snake and Salmon River Basin and analyze the genetic signatures from the collections in the context of a long-term historical baseline of hatchery production and natural variation in wild salmonid production there. Initiated in 1989, this study monitors genetic changes associated with hatchery propagation in multiple Snake River sub-basins for Chinook salmon and steelhead. We also derive estimates of reproductive success for individual families and groups of fish. The information obtained from this study directly addresses a critical knowledge gap identified by comanagers, which is: under what conditions does hatchery supplementation provide a sustained contribution to natural production? Co-managers are ODFW, CTUIR, NPT, WDFW, IDFG, and SBT. This type of monitoring work is now an essential part of hatchery reform and the goal of using widespread hatchery propagation in recovery of natural populations. |
| Purpose: |
Addresses Legal Mandate Raw/field data, Time series (of types 1-3), Laboratory data |
| Notes: |
Loaded by batch 4312, 02-01-2013 15:00 |
| Supplemental Information: |
Subject to Public Access to Research Results (PARR): Yes Report: Monitoring and evaluating the genetic characteristics of supplemented salmon and steelhead. Annual report of activities and results from calendar year 2019. Report: Monitoring and evaluating the genetic characteristics of supplemented salmon and steelhead. Rollup report of BiOp-related activities from calendar year 2019. |
Keywords
Theme Keywords
| Thesaurus | Keyword |
|---|---|
| UNCONTROLLED | |
| None | artificial propagation |
| None | hatchery |
| None | salmon |
| None | Snake River |
Spatial Keywords
| Thesaurus | Keyword |
|---|---|
| UNCONTROLLED | |
| None | Manchester Research Station |
| None | NWFSC Montlake |
| None | Snake River Basin |
Instrument Keywords
| Thesaurus | Keyword |
|---|---|
| UNCONTROLLED | |
| None | DNA Sequencer |
Platform Keywords
| Thesaurus | Keyword |
|---|---|
| UNCONTROLLED | |
| None | Unknown Physical Collection Device |
Physical Location
| Organization: | Northwest Fisheries Science Center |
|---|---|
| City: | Seattle |
| State/Province: | WA |
| Country: | USA |
Data Set Information
| Data Set Scope Code: | Data Set |
|---|---|
| Data Set Type: | Spreadsheet |
| Data Presentation Form: | Table (digital) |
Support Roles
Data Steward
| Date Effective From: | 2015-10-01 |
|---|---|
| Date Effective To: | |
| Contact (Person): | Berntson, Ewann A |
| Address: |
2725 Montlake Boulevard East Seattle, WA 98112 |
| Email Address: | Ewann.Berntson@noaa.gov |
| Phone: | 360-871-8333 |
Distributor
| Date Effective From: | 2015-10-01 |
|---|---|
| Date Effective To: | |
| Contact (Organization): | Northwest Fisheries Science Center (NWFSC) |
| Address: |
2725 Montlake Boulevard East Seattle, WA 98112 USA |
| Email Address: | nmfs.nwfsc.metadata@noaa.gov |
| Phone: | 206-860-3200 |
| URL: | NWFSC Home |
Metadata Contact
| Date Effective From: | 2015-10-01 |
|---|---|
| Date Effective To: | |
| Contact (Organization): | Northwest Fisheries Science Center (NWFSC) |
| Address: |
2725 Montlake Boulevard East Seattle, WA 98112 USA |
| Email Address: | nmfs.nwfsc.metadata@noaa.gov |
| Phone: | 206-860-3200 |
| URL: | NWFSC Home |
Originator
| Date Effective From: | 2015-10-01 |
|---|---|
| Date Effective To: | |
| Contact (Person): | Berntson, Ewann A |
| Address: |
2725 Montlake Boulevard East Seattle, WA 98112 |
| Email Address: | Ewann.Berntson@noaa.gov |
| Phone: | 360-871-8333 |
Point of Contact
| Date Effective From: | 2015-10-01 |
|---|---|
| Date Effective To: | |
| Contact (Person): | Berntson, Ewann A |
| Address: |
2725 Montlake Boulevard East Seattle, WA 98112 |
| Email Address: | Ewann.Berntson@noaa.gov |
| Phone: | 360-871-8333 |
Extents
Extent Group 1
Extent Group 1 / Geographic Area 1
| W° Bound: | -122.5547 | |
|---|---|---|
| E° Bound: | -122.5547 | |
| N° Bound: | 47.569 | |
| S° Bound: | 47.569 | |
| Description |
Manchester Research Station |
|
Extent Group 1 / Time Frame 1
| Time Frame Type: | Continuing |
|---|---|
| Start: | 1989-11-01 |
Extent Group 2
Extent Group 2 / Geographic Area 1
| W° Bound: | -122.3062 | |
|---|---|---|
| E° Bound: | -122.3062 | |
| N° Bound: | 47.6449 | |
| S° Bound: | 47.6449 | |
| Description |
NWFSC Montlake: NWFSC Montlake, Seattle |
|
Extent Group 2 / Time Frame 1
| Time Frame Type: | Continuing |
|---|---|
| Start: | 1989-11-01 |
Extent Group 3
Extent Group 3 / Geographic Area 1
| W° Bound: | -122.5547 | |
|---|---|---|
| E° Bound: | -122.3062 | |
| N° Bound: | 47.6449 | |
| S° Bound: | 47.569 | |
| Description |
Snake River Basin: Snake River Basin, a Columbia River tributary |
|
Extent Group 3 / Time Frame 1
| Time Frame Type: | Continuing |
|---|---|
| Start: | 1989-11-01 |
Access Information
| Security Class: | Unclassified |
|---|---|
| Data Access Procedure: |
At this time, contact the Data Manager for information on obtaining access to this data set. In the near future, the NWFSC will strive to provide all data resources as a web service in order to meet the NOAA Data Access Policy Directive (https://nosc.noaa.gov/EDMC/PD.DA.php). |
| Data Access Constraints: |
NA |
Distribution Information
Distribution 1
| Start Date: | 2018-02-15 |
|---|---|
| End Date: | Present |
| Download URL: | https://www.webapps.nwfsc.noaa.gov/apex/parr/little_sheep_creek_steelhead/data/page/ |
| Distributor: | Northwest Fisheries Science Center (NWFSC) (2015-10-01 - Present) |
| File Name: | Little Sheep Creek steelhead (RESTful) |
| Description: |
This is a table of microsatellite genotypes for Little Sheep steelhead included in Berntson et al. 2011. Transactions of the American Fisheries Society 140:685-698. Each locus is represented by two alleles, 3 digits for each allele, where alleles are mobility/size determined, per standard published criteria. Loci are the SPAN suite, described in Blankenship et al. 2011. Transactions of the American Fisheries Society 140:665-684. |
Distribution 2
| Start Date: | 2018-02-15 |
|---|---|
| End Date: | Present |
| Download URL: | https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/tables/table/little_sheep_creek_steelhead |
| Distributor: | Northwest Fisheries Science Center (NWFSC) (2015-10-01 - Present) |
| File Name: | Little Sheep Creek steelhead |
| Description: |
This is a table of microsatellite genotypes for Little Sheep steelhead included in Berntson et al. 2011. Transactions of the American Fisheries Society 140:685-698. Each locus is represented by two alleles, 3 digits for each allele, where alleles are mobility/size determined, per standard published criteria. Loci are the SPAN suite, described in Blankenship et al. 2011. Transactions of the American Fisheries Society 140:665-684. |
URLs
URL 1
| URL: | https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/datasets/dataset/10654 |
|---|---|
| Name: | BPA genetic monitoring |
| URL Type: |
Online Resource
|
| File Resource Format: | Web site |
| Description: |
NWFSC Dataset Information page. Initiated in 1989, this study monitors genetic changes associated with hatchery propagation in multiple Snake River sub-basins for Chinook salmon and steelhead. We also derive estimates of reproductive success for individual families and groups of fish. The information obtained from this study directly addresses a critical knowledge gap identified by comanagers, which is: under what conditions does hatchery supplementation provide a sustained contribution to natural production? Co-managers are ODFW, CTUIR, NPT, WDFW, IDFG, and SBT. This type of monitoring work is now an essential part of hatchery reform and the goal of using widespread hatchery propagation in recovery of natural populations. |
Technical Environment
| Description: |
Spreadsheet |
|---|
Data Quality
| Accuracy: |
High |
|---|---|
| Quality Control Procedures Employed: |
QA/QC genotypes run, elimination of fish missing too many genotypes, elimination of duplicate genotypes. |
Data Management
| Have Resources for Management of these Data Been Identified?: | No |
|---|---|
| Approximate Percentage of Budget for these Data Devoted to Data Management: | 5 |
| Do these Data Comply with the Data Access Directive?: | No |
| Is Access to the Data Limited Based on an Approved Waiver?: | No |
| If Distributor (Data Hosting Service) is Needed, Please Indicate: | No |
| Approximate Delay Between Data Collection and Dissemination: | 0 days |
| If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed: |
No Delay |
| Actual or Planned Long-Term Data Archive Location: | Other |
| If World Data Center or Other, Specify: | Idaho Department of Fish and Game |
| Approximate Delay Between Data Collection and Archiving: | 365 |
| How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?: |
See FishGen.net website for details. |
Lineage
| Lineage Statement: |
Genotype generation, plus genotype QA/QC. |
|---|
Child Items
Rubric scores updated every 15m
|
Type | Title |
|---|---|---|
| Entity | Little Sheep Creek steelhead |
Catalog Details
| Catalog Item ID: | 18054 |
|---|---|
| GUID: | gov.noaa.nmfs.inport:18054 |
| Metadata Record Created By: | SysAdmin InPortAdmin |
| Metadata Record Created: | 2013-02-01 15:00+0000 |
| Metadata Record Last Modified By: | SysAdmin InPortAdmin |
| Metadata Record Last Modified: | 2022-08-09 17:11+0000 |
| Metadata Record Published: | 2019-06-04 |
| Owner Org: | NWFSC |
| Metadata Publication Status: | Published Externally |
| Do Not Publish?: | N |
| Metadata Last Review Date: | 2019-06-04 |
| Metadata Review Frequency: | 1 Year |
| Metadata Next Review Date: | 2020-06-04 |