National Status and Trends, Benthic Surveillance Project Pathology, 1984-1992, National Centers for Coastal Ocean Science
Data Set (DS) | National Centers for Coastal Ocean Science (NCCOS)GUID: gov.noaa.nmfs.inport:39260 | Updated: October 17, 2023 | Published / External
Summary
Short Citation
National Centers for Coastal Ocean Science, 2024: National Status and Trends, Benthic Surveillance Project Pathology, 1984-1992, National Centers for Coastal Ocean Science, https://www.fisheries.noaa.gov/inport/item/39260.
Full Citation Examples
In order to determine the current status of and to detect any long-term trends in the environmental quality of U.S. nearshore waters, NOAA initiated the National Status and Trends program in 1984 with its National Benthic Surveillance Project. The primary objective of the Benthic Surveillance Project was to quantify concentrations of a suite of organic and inorganic contaminants in the livers of fish and surficial sediments from selected sites in the coastal and estuarine waters of the United States. In addition, the levels of certain indicators of the biological effects of these contaminants were measured. Incidences of visible lesions, including fin erosion, have been noted and histopathological examinations of various tissues have been carried out. Originally histopathological examinations determined the prevalence of any identifiable disease conditions in samples of liver, kidney, and gill tissue. Beginning in 1987 examinations became more focused on determining the prevalence of necrotic and proliferative lesions in the liver.
Distribution Information
-
XML (Structured Text)
Live Data and Maps
-
Text (Unstructured)
Live Data and Maps
None
NOAA requests that all individuals who download NSandT data acknowledge the source of these data in any reports, papers, or presentations. If you publish these data, please include a statement similar to: "Some or all of the data described in this article were produced by the National Oceanic and Atmospheric Administration through its National Status and Trends Program".
Controlled Theme Keywords
environment
Child Items
Type | Title |
---|---|
Entity | Dataset Parameters for Benthic Surveillance Pathology data |
Contact Information
Point of Contact
NCCOS Scientific Data Coordinator
NCCOS.data@noaa.gov
Metadata Contact
NCCOS Scientific Data Coordinator
NCCOS.data@noaa.gov
Extents
-159.356° W,
-66.181° E,
61.133° N,
17.939° S
1984 - 1992
Item Identification
Title: | National Status and Trends, Benthic Surveillance Project Pathology, 1984-1992, National Centers for Coastal Ocean Science |
---|---|
Short Name: | bspath_h |
Status: | Completed |
Publication Date: | 1992 |
Abstract: |
In order to determine the current status of and to detect any long-term trends in the environmental quality of U.S. nearshore waters, NOAA initiated the National Status and Trends program in 1984 with its National Benthic Surveillance Project. The primary objective of the Benthic Surveillance Project was to quantify concentrations of a suite of organic and inorganic contaminants in the livers of fish and surficial sediments from selected sites in the coastal and estuarine waters of the United States. In addition, the levels of certain indicators of the biological effects of these contaminants were measured. Incidences of visible lesions, including fin erosion, have been noted and histopathological examinations of various tissues have been carried out. Originally histopathological examinations determined the prevalence of any identifiable disease conditions in samples of liver, kidney, and gill tissue. Beginning in 1987 examinations became more focused on determining the prevalence of necrotic and proliferative lesions in the liver. |
Purpose: |
In response to concerns over environmental quality of the Nation's coastal and estuarine ecosystems, NOAA created the National Status and Trends (NSandT) Program in 1984. From 1984 through 1993, the Benthic Surveillance Project monitored chemical concentrations in the livers (and for metabolites of PAH's in the bile) of bottom-dwelling fish and in sediments at the sites of fish capture. The Benthic Surveillance Project also measured the biological effects of contaminant exposure, primarily as prevalence's of toxicopathic liver diseases. |
Notes: |
984 |
Keywords
Theme Keywords
Thesaurus | Keyword |
---|---|
ISO 19115 Topic Category |
environment
|
UNCONTROLLED | |
None | benthic |
None | Coastal Monitoring |
None | disease |
None | fish |
None | histology |
None | histopathology |
None | marine |
None | NCCOS Research Data Type > Field Observation |
None | NCCOS Research Priority > Long-term Monitoring |
None | NCCOS Research Priority > Stressors, Impacts, Mitigation, and Restoration (SIMR) |
None | NCCOS Research Topic > Bioeffects/Toxicity |
None | NCCOS Research Topic > Chemical Contaminants |
None | NCCOS Research Topic > Monitoring |
None | NSandT |
None | oceans |
None | pathology |
None | species |
Spatial Keywords
Thesaurus | Keyword |
---|---|
UNCONTROLLED | |
None | Apalachicola Bay, Cape George |
None | Apalachicola Bay, St. George Island |
None | Baltimore Harbor, Brewerton Channel |
None | Barataria Bay, Barataria Pass |
None | Beaufort Sea, Oliktok Point |
None | Beaufort Sea, Prudhoe Bay |
None | Bering Sea, Dutch Harbor |
None | Bering Sea, Port Moller |
None | Biscayne Bay, Chicken Key |
None | Biscayne Bay, North Bay |
None | Boca de Quadra, Bacrian Point |
None | Bodega Bay, North |
None | Boston Harbor, Deer Island |
None | Boston Harbor, Hull Bay |
None | Boston Harbor, Mystic River |
None | Boston Harbor, Quincy Bay |
None | Buzzards Bay, West Island |
None | Calcasieu River, Bayou d Inde |
None | Calcasieu River, Prien Lake |
None | Calcasieu River, West Cove |
None | Cape Elizabeth, Richmond Island |
None | Cape Fear River, Horseshoe Shaol |
None | Charleston Harbor, South Channel |
None | Charlotte Harbor, Cape Haze |
None | Chesapeake Bay, Chester River |
None | Chesapeake Bay, James River |
None | Chesapeake Bay, Patuxent River |
None | Choctawhatchee Bay, Choctawhatchee Bay |
None | Chukchi Sea, Red Dog Mine |
None | Columbia River, Desdemona Sands |
None | Columbia River, Youngs Bay |
None | Coos Bay, North Bend |
None | Corpus Christi Bay, Corpus Christi Channel |
None | Dana Point Harbor, Outside |
None | Dana Point, Inside Harbor |
None | Delaware Bay, Cherry Island Range |
None | Estero Bay, Estero Bay |
None | Galveston Bay, Eagle Point |
None | Galveston Bay, East Bay |
None | Galveston Bay, Goat Islands |
None | Galveston Bay, Greens Bayou |
None | Galveston Bay, Morgans Point |
None | Great Bay, Intracoastal Waterway |
None | Great Bay, Seven Island |
None | Gulf of Alaska, Kamishak Bay |
None | Heald Point, Heald Point |
None | Heron Bay, Heron Bay |
None | Hudson River, Englewood Cliffs |
None | Humboldt Bay, Indian Island |
None | Johns Bay, Pemaquid Neck |
None | Lavaca Bay, Point Comfort |
None | Long Island Sound, Bridgeport |
None | Long Island Sound, Lloyd Point |
None | Long Island Sound, New Haven |
None | Long Island Sound, Norwalk |
None | Long Island Sound, Rocky Point |
None | Lower Laguna Madre, Laguna Heights |
None | Lower Laguna Madre, Long Island |
None | Lutak Inlet, Chilkoot River Mouth |
None | Massachusetts Bay, Outside Boston |
None | Massachusetts Bay, Plymouth Entrance |
None | Mission Bay, Mission Bay |
None | Mission Bay, Outside |
None | Mississippi River Delta, Head of Passes |
None | Mississippi River Delta, Southeast Pass |
None | Mobile Bay, North Point |
None | Monterey Bay, Indian Head Beach |
None | Monterey Bay, Moss Landing |
None | Nahku Bay, East Side |
None | Narragansett Bay, Prudence Island |
None | NCCOS Research Location > Geographic Area > Coastal Ocean |
None | NCCOS Research Location > Region > Alaska |
None | NCCOS Research Location > Region > East Coast |
None | NCCOS Research Location > Region > Gulf of Mexico |
None | NCCOS Research Location > Region > West Coast |
None | NCCOS Research Location > U.S. States and Territories > Alabama |
None | NCCOS Research Location > U.S. States and Territories > Alaska |
None | NCCOS Research Location > U.S. States and Territories > California |
None | NCCOS Research Location > U.S. States and Territories > Connecticut |
None | NCCOS Research Location > U.S. States and Territories > Delaware |
None | NCCOS Research Location > U.S. States and Territories > Florida |
None | NCCOS Research Location > U.S. States and Territories > Georgia |
None | NCCOS Research Location > U.S. States and Territories > Louisiana |
None | NCCOS Research Location > U.S. States and Territories > Maine |
None | NCCOS Research Location > U.S. States and Territories > Maryland |
None | NCCOS Research Location > U.S. States and Territories > Massachusetts |
None | NCCOS Research Location > U.S. States and Territories > Mississippi |
None | NCCOS Research Location > U.S. States and Territories > New Jersey |
None | NCCOS Research Location > U.S. States and Territories > New York |
None | NCCOS Research Location > U.S. States and Territories > North Carolina |
None | NCCOS Research Location > U.S. States and Territories > Oregon |
None | NCCOS Research Location > U.S. States and Territories > Rhode Island |
None | NCCOS Research Location > U.S. States and Territories > South Carolina |
None | NCCOS Research Location > U.S. States and Territories > Texas |
None | NCCOS Research Location > U.S. States and Territories > Virginia |
None | NCCOS Research Location > U.S. States and Territories > Washington |
None | New Bedford Harbor, Clarks Point |
None | Niantic Bay, Black Point |
None | Oceanside Harbor, Outside |
None | Pamlico Sound, Jones Bay |
None | Pascagoula River, Escatawpa River |
None | Pascagoula River, Pascagoula River |
None | Penobscot Bay, Colt Head Island |
None | Pensacola Bay, Pensacola Bay |
None | Prince William Sound, Port Valdez |
None | Puget Sound, Commencement Bay |
None | Puget Sound, Elliott Bay |
None | Puget Sound, Nisqually Reach |
None | Raritan Bay, East Reach |
None | Raritan Bay, Gravesend Bay |
None | Raritan Bay, Upper Bay |
None | Raritan Bay, West Reach |
None | Salem Harbor, Folger Point |
None | San Antonio Bay, Mosquito Point |
None | San Diego Bay, Harbor Island |
None | San Diego Bay, Mouth |
None | San Diego Bay, National City |
None | San Diego Bay, North |
None | San Diego Bay, Outside |
None | San Diego Bay, Shelter Island |
None | San Diego Bay, Twenty Eighth Street |
None | San Francisco Bay, Castro Creek |
None | San Francisco Bay, Hunters Point |
None | San Francisco Bay, Islais Creek Channel |
None | San Francisco Bay, Oakland Enterance |
None | San Francisco Bay, Oakland Estuary |
None | San Francisco Bay, Redwood City |
None | San Francisco Bay, San Pablo Bay |
None | San Francisco Bay, Southampton Shoal |
None | San Luis Obispo Bay, San Luis Obispo Bay |
None | San Pedro Bay, Cerritos Channel |
None | San Pedro Bay, Long Beach |
None | San Pedro Bay, Mid Harbor |
None | San Pedro Bay, Outer Harbor |
None | San Pedro Bay, Outside |
None | San Pedro Bay, Seal Beach |
None | Santa Monica Bay, Manhatten Beach |
None | Santa Monica Bay, North |
None | Santa Monica Bay, South |
None | Santa Monica Bay, Southeast |
None | Santa Monica Bay, West |
None | Sapelo Sound, Dog Hammock |
None | Savannah River, Elba Island |
None | Simpson Lagoon, Simpson Lagoon |
None | Skagway, Skagway River |
None | Soldana Beach, Soldana Beach |
None | St. Andrews Bay, Military Point |
None | St. Johns River, Arlington Channel |
None | St. Lucie River, Stuart |
None | Tampa Bay, Northern Tampa Bay |
None | Tomales Bay, Tomales Bay |
None | Treasure Island, Treasure Island |
None | U.S. Exclusive Economic Zone |
Physical Location
Organization: | National Centers for Coastal Ocean Science |
---|---|
City: | Silver Spring |
State/Province: | MD |
Data Set Information
Data Set Scope Code: | Data Set |
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Maintenance Frequency: | None Planned |
Distribution Liability: |
None |
Support Roles
Data Steward
Date Effective From: | 1992 |
---|---|
Date Effective To: | |
Contact (Position): | NCCOS Scientific Data Coordinator |
Email Address: | NCCOS.data@noaa.gov |
Distributor
Date Effective From: | 1992 |
---|---|
Date Effective To: | |
Contact (Position): | NCCOS Scientific Data Coordinator |
Email Address: | NCCOS.data@noaa.gov |
Metadata Contact
Date Effective From: | 1992 |
---|---|
Date Effective To: | |
Contact (Position): | NCCOS Scientific Data Coordinator |
Email Address: | NCCOS.data@noaa.gov |
Point of Contact
Date Effective From: | 1992 |
---|---|
Date Effective To: | |
Contact (Position): | NCCOS Scientific Data Coordinator |
Email Address: | NCCOS.data@noaa.gov |
Principal Investigator
Date Effective From: | 1992 |
---|---|
Date Effective To: | |
Contact (Person): | Piniak, Greg |
Email Address: | greg.piniak@noaa.gov |
Extents
Currentness Reference: | Publication Date |
---|
Extent Group 1
Extent Group 1 / Geographic Area 1
W° Bound: | -159.356 | |
---|---|---|
E° Bound: | -66.181 | |
N° Bound: | 61.133 | |
S° Bound: | 17.939 |
Extent Group 1 / Time Frame 1
Time Frame Type: | Range |
---|---|
Start: | 1984 |
End: | 1992 |
Spatial Information
Spatial Representation
Representations Used
Vector: | Yes |
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Access Information
Security Class: | Unclassified |
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Data Access Constraints: |
None |
Data Use Constraints: |
NOAA requests that all individuals who download NSandT data acknowledge the source of these data in any reports, papers, or presentations. If you publish these data, please include a statement similar to: "Some or all of the data described in this article were produced by the National Oceanic and Atmospheric Administration through its National Status and Trends Program". |
Distribution Information
Distribution 1
Download URL: | https://products.coastalscience.noaa.gov/collections/ltmonitoring/nsandt/default.aspx |
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Distributor: | |
Description: |
Live Data and Maps |
File Type (Deprecated): | XML |
Distribution Format: | XML (Structured Text) |
Distribution 2
Download URL: | https://products.coastalscience.noaa.gov/collections/ltmonitoring/nsandt/default.aspx |
---|---|
Distributor: | |
Description: |
Live Data and Maps |
File Type (Deprecated): | ASCII |
Distribution Format: | Text (Unstructured) |
URLs
URL 1
URL: | https://products.coastalscience.noaa.gov/collections/ltmonitoring/nsandt/default.aspx |
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URL Type: |
Online Resource
|
Activity Log
Activity Log 1
Activity Date/Time: | 2016-11-16 |
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Description: |
Date that the source FGDC record was last modified. |
Activity Log 2
Activity Date/Time: | 2017-04-05 |
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Description: |
Converted from FGDC Content Standards for Digital Geospatial Metadata (version FGDC-STD-001-1998) using 'fgdc_to_inport_xml.pl' script. Contact Tyler Christensen (NOS) for details. |
Activity Log 3
Activity Date/Time: | 2017-09-13 |
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Description: |
Partial upload of Spatial Info section only. |
Activity Log 4
Activity Date/Time: | 2017-11-01 |
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Description: |
Replaced entire Lineage section to populate new Source Contribution field. |
Activity Log 5
Activity Date/Time: | 2018-02-08 |
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Description: |
Partial upload of Positional Accuracy fields only. |
Technical Environment
Description: |
Microsoft Windows 2000 Version 5.0 (Build 2195) Service Pack 3; ESRI ArcCatalog 8.3.0.800 |
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Data Quality
Accuracy: |
Once sampling in a certain geographic area is initiated, repeat sampling occurs during the same time frame. Northeast samples (Chesapeake Bay through Maine) have been collected during March and April. Southeast samples have been collected from August to October. Gulf Coast samples have been collected from August to October. West Coast samples have been taken from May through July. Alaska samples have been taken from May to August. The collection of fish was not directly tied to their spawning cycle, though different age classes may be found in certain estuaries during different times of the year. |
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Horizontal Positional Accuracy: |
The same kind of field/site data have been supplied since the start of the Benthic Surveillance Project, in 1984. Original site coordinates were derived from Loran-C time conversions. Early sites information resulting from Loran-C was converted from time delay information to latitudes and longitudes. These earlier data may be suspect when sites were located close to large structures that could have interfered with accurate time delays. When GPS was first available the signal was intentionally degraded so earlier coordinate information, even if it resulted from GPS, is not as accurate as data would be today.Because fish are not sessile, fish trawls have been made along different tracks in the water body of interest. The latitude/longitude coordinates provided in this file represent a site center and trawling occurs within a 1 km radius of this location. |
Completeness Report: |
Once sampling in a certain geographic area is initiated, repeat sampling occurs during the same time frame. Northeast samples (Chesapeake Bay through Maine) have been collected during March and April. Southeast samples have been collected from August to October. Gulf Coast samples have been collected from August to October. West Coast samples have been taken from May through July. Alaska samples have been taken from May to August. The collection of fish was not directly tied to their spawning cycle, though different age classes may be found in certain estuaries during different times of the year.The Benthic Surveillance Project Pathology dataset does not include data relating to the chemistry, or location data that is associated with each site. |
Conceptual Consistency: |
Fish tissues for histopathological examination were prepared in the field because freezing destroys the morphology of tissue. Because most fish were dissected onboard ship, a special effort was made to develop an environment as close to clean-room conditions as possible. All fish were dissected in positive pressure laminar flow hoods. Air was drawn into the laminar flow hood from above and filtered by a high efficiency particle attenuator (HEPA) filter before it passed over the fish samples. Stainless steel tools were used to dissect fish for organic analysis. Titanium tools were used to dissect fish for trace metal analyses because tools made of this element do not pose the problem of introducing nickel, chromium, and/or iron into the specimens to be analyzed. Specimens were analyzed for the latter three elements by the NSandT Program. After knives had been sharpened, and before dissections began at a new site or of a new species, the dissection equipment was thoroughly cleaned with detergent solution, rinsed extensively with tap water, rinsed in distilled or high-purity water (i.e., milli-Q or HPLC-grade water), rinsed with isopropanol under a fume hood, followed by a rinse with distilled water, and placed on a similarly cleaned Teflon cutting board that was allowed to air-dry in the laminar-flow hood. Between individual fish of the same species at the same site, the tools were rinsed with distilled water before any fluid or tissue had a chance to dry on the knife. Sexually mature fish were primarily used in this program, determined by size of each species. |
Lineage
Sources
Sampling and analytical methods of the National Status and Trends Program National Benthic Surveillance and Mussel Watch Projects 1984-1992: Overview and summary of methods, NOAA Technical Memorandum NOS ORCA 71
Contact Name: | National Oceanic and Atmospheric Administration (NOAA), National Ocean Service (NOS), National Centers for Coastal Ocean Science (NCCOS), Center for Coastal Monitoring and Assessment (CCMA) |
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Publish Date: | 1993-01-01 |
Extent Type: | Range |
Extent Start Date/Time: | 1984 |
Extent End Date/Time: | 1993 |
Source Contribution: |
Benthic Surveillance Sampling Protocols | Source Geospatial Form: document | Type of Source Media: document |
Process Steps
Process Step 1
Description: |
Benthic marine fish samples were collected for pathology, trace metal analysis and for traces of organic contamination. Additional data were collected at the sampling sites, including salinity, temperature, and sediment for grain size and chemical analysis. The primary collection apparatus was Otter trawls. Occasionally, along the Southeast and Gulf Coasts, fish were taken with hook and line, or with gill nets. These alternate collection methods were necessary because larger fish, such as older Atlantic croaker, were able to avoid an Otter trawl, or were found in untrawlable habitats such as shallow water, along marsh edges, and over oyster reefs. Fish in the correct size range were dissected in the onboard laboratory immediately after collection. This ensured that a determination could be made regarding whether sufficient material had been collected and whether the sample material was of high quality. If either one of these criteria was not met, the opportunity existed to continue sample collection.Because most fish were dissected onboard ship, a special effort was made to develop an environment as close to clean-room conditions as possible. All fish were dissected in positive pressure laminar flow hoods. Air was drawn into the laminar flow hood from above and filtered by a high efficiency particle attenuator (HEPA) filter before it passed over the fish samples. Stainless steel tools were used to dissect fish for organic analysis. Titanium tools were used to dissect fish for trace metal analyses because tools made of this element do not pose the problem of introducing nickel, chromium, and/or iron into the specimens to be analyzed. Specimens were analyzed for the latter three elements by the NSandT Program. After knives had been sharpened, and before dissections began at a new site or of a new species, the dissection equipment was thoroughly cleaned with detergent solution, rinsed extensively with tap water, rinsed in distilled or high-purity water (i.e., milli-Q or HPLC-grade water), rinsed with isopropanol under a fume hood, followed by a rinse with distilled water, and placed on a similarly cleaned Teflon cutting board that was allowed to air-dry in the laminar-flow hood. Between individual fish of the same species at the same site, the tools were rinsed with distilled water before any fluid or tissue had a chance to dry on the knife. Sexually mature fish were primarily used in this program, determined by size of each species. Once sampling in a certain geographic area is initiated, repeat sampling occurs during the same time frame. Northeast samples (Chesapeake Bay through Maine) have been collected during March and April. Southeast samples have been collected from August to October. Gulf Coast samples have been collected from August to October. West Coast samples have been taken from May through July. Alaska samples have been taken from May to August. The collection of fish was not directly tied to their spawning cycle, though different age classes may be found in certain estuaries during different times of the year. Samples were collected directly from NOAA ships or from small boats launched from NOAA ships, or on occasion from chartered vessels or ships-of-opportunity.Process Date Range is 1984 - 1992 |
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Process Date/Time: | 1992-01-01 00:00:00 |
Child Items
Rubric scores updated every 15m
Type | Title | |
---|---|---|
Entity | Dataset Parameters for Benthic Surveillance Pathology data |
Catalog Details
Catalog Item ID: | 39260 |
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GUID: | gov.noaa.nmfs.inport:39260 |
Metadata Record Created By: | Tyler Christensen |
Metadata Record Created: | 2017-04-05 12:51+0000 |
Metadata Record Last Modified By: | SysAdmin InPortAdmin |
Metadata Record Last Modified: | 2023-10-17 16:12+0000 |
Metadata Record Published: | 2018-02-08 |
Owner Org: | NCCOS |
Metadata Publication Status: | Published Externally |
Do Not Publish?: | N |
Metadata Last Review Date: | 2018-02-08 |
Metadata Review Frequency: | 1 Year |
Metadata Next Review Date: | 2019-02-08 |