RESTORE Sponsored Research Project: Population Connectivity of Deepwater Corals in the...

Item Identification

Title:	RESTORE Sponsored Research Project: Population Connectivity of Deepwater Corals in the Northern Gulf of Mexico
Short Name:	Project: Herrera, Deepwater Corals
Status:	In Work
Creation Date:	2017
Publication Date:	2021
Abstract:	This project will determine where the corals in different mesophotic (50-150 m) and deepwater (150-2400 m) populations in the Gulf of Mexico originated from, which is critical information for conserving and restoring these important habitats that were damaged by the Deepwater Horizon (DWH) Oil Spill.
Purpose:	Deepwater corals provide habitat for diverse and abundant invertebrate and fish communities, including refuge and prey for commercially valuable fisheries. These extremely slow-growing communities are becoming increasingly vulnerable to anthropogenic threats from increased ocean temperatures, fishing activities, and oil and gas exploration. Understanding how deepwater corals are genetically connected is critical to their conservation and restoration. This collaborative effort will enhance the understanding of Gulf of Mexico coral ecosystems with concrete restoration and conservation initiatives to ensure recovery of degraded deepwater coral communities. The information gained from this project will aid in decision-making regarding establishment of Marine Protected Areas (MPAs) by the Gulf of Mexico Fishery Management Council. This project is led by the Lehigh University in partnership with Harvey Mudd College, the Georgia Institute of Technology, and NOAA. This project is funded by the NOAA RESTORE Science Program under award NA17NOS4510096 to Lehigh University.

Keywords

Theme Keywords

Thesaurus	Keyword
Global Change Master Directory (GCMD) Science Keywords	EARTH SCIENCE
Global Change Master Directory (GCMD) Science Keywords	EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > REEF
Global Change Master Directory (GCMD) Service Keywords	EARTH SCIENCE SERVICES > MODELS > DYNAMIC VEGETATION/ECOSYSTEM MODELS
UNCONTROLLED
NCCOS Keywords	NCCOS Research Data Type > Field Observation
NCCOS Keywords	NCCOS Research Data Type > Model
NCCOS Keywords	NCCOS Sponsored Research > RESTORE Science Program

Thesaurus

Keyword

Global Change Master Directory (GCMD) Science Keywords

EARTH SCIENCE

Global Change Master Directory (GCMD) Science Keywords

EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > REEF

Global Change Master Directory (GCMD) Service Keywords

EARTH SCIENCE SERVICES > MODELS > DYNAMIC VEGETATION/ECOSYSTEM MODELS

UNCONTROLLED

NCCOS Keywords

NCCOS Research Data Type > Field Observation

NCCOS Keywords

NCCOS Research Data Type > Model

NCCOS Keywords

NCCOS Sponsored Research > RESTORE Science Program

Spatial Keywords

Thesaurus	Keyword
Global Change Master Directory (GCMD) Location Keywords	OCEAN > ATLANTIC OCEAN > NORTH ATLANTIC OCEAN > GULF OF MEXICO
UNCONTROLLED
NCCOS Keywords	NCCOS Research Location > Region > Gulf of Mexico

Thesaurus

Keyword

Global Change Master Directory (GCMD) Location Keywords

OCEAN > ATLANTIC OCEAN > NORTH ATLANTIC OCEAN > GULF OF MEXICO

UNCONTROLLED

NCCOS Keywords

NCCOS Research Location > Region > Gulf of Mexico

Physical Location

Organization:	National Centers for Coastal Ocean Science
City:	Silver Spring
State/Province:	MD

Data Set Information

Data Set Scope Code:	Data Set
Data Presentation Form:	Table (digital)

Support Roles

Data Steward

CC ID: 1086616

Date Effective From:	2021
Date Effective To:
Contact (Position):	NCCOS Scientific Data Coordinator
Email Address:	NCCOS.data@noaa.gov

Distributor

CC ID: 1086620

Date Effective From:	2021
Date Effective To:
Contact (Organization):	NOAA National Centers for Environmental Information (NCEI)
Email Address:	ncei.info@noaa.gov
URL:	NCEI Contact Information

Distributor

CC ID: 1086634

Date Effective From:	2020
Date Effective To:
Contact (Organization):	National Institutes of Health, National Center for Biotechnology Information, Gene Expression Omnibus (NIH NCBI GEO)
Email Address:	geo@ncbi.nlm.nih.gov
URL:	Website Home Page

Metadata Contact

CC ID: 1086617

Date Effective From:	2021
Date Effective To:
Contact (Position):	NCCOS Scientific Data Coordinator
Email Address:	NCCOS.data@noaa.gov

Point of Contact

CC ID: 1086618

Date Effective From:	2017
Date Effective To:
Contact (Position):	NCCOS Scientific Data Coordinator
Email Address:	NCCOS.data@noaa.gov
Contact Instructions:	Frank Parker, NOAA RESTORE Science Program, frank.parker@noaa.gov

View Historical Support Roles

Extents

Extent Group 1

Extent Group 1 / Geographic Area 1

CC ID: 1086628

W° Bound:	-98
E° Bound:	-82
N° Bound:	31
S° Bound:	18
Description	RESTORE Program

Extent Group 1 / Time Frame 1

CC ID: 1086627

Time Frame Type:	Range
Start:	2017-06
End:	2022-05
Description:	Project

Access Information

Security Class:	Unclassified
Data Access Procedure:	Download from website
Data Access Constraints:	None
Data Use Constraints:	None

Distribution Information

Distribution 1

CC ID: 1183078

Start Date:	2021-12-14
End Date:	Present
Download URL:	https://doi.org/10.25921/t7n4-tt77
Distributor:	NOAA National Centers for Environmental Information (NCEI) (2021 - Present)
File Name:	NCEI Accession 0243646
Description:	Herrera, S. 2021. NOAA RESTORE Science Program: population connectivity of deepwater corals in the Northern Gulf of Mexico: conductivity-temperature-depth (CTD) cast data from 2017-07-20 to 2018-09-22 (NCEI Accession 0243646). NOAA National Centers for Environmental Information. Dataset. https://doi.org/10.25921/t7n4-tt77
File Type (Deprecated):	NCEI Archived Data Accession

Distribution 2

CC ID: 1183075

Start Date:	2021-11-05
End Date:	Present
Download URL:	https://www.dropbox.com/sh/1qrtj8qq9r68ixy/AACacahcanK7mwTX1rTT4laka?dl=0
Distributor:
File Name:	Model Data on Dropbox
Description:	Bracco, A. 2021. Coral Paper. Georgia Institute of Technology Dropbox. https://www.dropbox.com/sh/1qrtj8qq9r68ixy/AACacahcanK7mwTX1rTT4laka?dl=0

Distribution 3

CC ID: 1089020

Start Date:	2021-09-28
End Date:	Present
Download URL:	https://www.ncbi.nlm.nih.gov/
Distributor:	National Institutes of Health, National Center for Biotechnology Information, Gene Expression Omnibus (NIH NCBI GEO) (2020 - Present)
File Name:	Genetic Data
Description:	Herrera, S. 2021. Swiftia exserta isolate OP_17_95 mismatch repair protein (MutS) gene, partial cds; mitochondrial. National Center for Biotechnology Information, Accession: MW357889. https://www.ncbi.nlm.nih.gov/nuccore/MW357889 Date: 09-28-2021 Herrera, S. 2021. Swiftia exserta isolate OP_17_096 mismatch repair protein (MutS) gene, partial cds; mitochondrial. National Center for Biotechnology Information, Accession: MW357890. https://www.ncbi.nlm.nih.gov/nuccore/MW357890 Date: 09-28-2021 Herrera, S. 2021. Swiftia exserta isolate OP_17_322 mismatch repair protein (MutS) gene, partial cds; mitochondrial. National Center for Biotechnology Information, Accession: MW357887. https://www.ncbi.nlm.nih.gov/nuccore/MW357887 Date: 09-28-2021 Herrera, S. 2021. Swiftia exserta isolate OP_17_324 mismatch repair protein (MutS) gene, partial cds; mitochondrial. National Center for Biotechnology Information, Accession: MW357888. https://www.ncbi.nlm.nih.gov/nuccore/MW357888 Date: 09-28-2021 Herrera, S. 2021. Swiftia exserta isolate OP_17_351 mismatch repair protein (MutS) gene, partial cds; mitochondrial. National Center for Biotechnology Information, Accession: MW357891. https://www.ncbi.nlm.nih.gov/nuccore/MW357891 Date: 09-28-2021 Herrera, S. 2021. mismatch repair protein, partial (mitochondrion) [Swiftia exserta]. National Center for Biotechnology Information, Accession: UBI51323. https://www.ncbi.nlm.nih.gov/protein/UBI51323 Date: 09-28-2021 Herrera, S. 2021. mismatch repair protein, partial (mitochondrion) [Swiftia exserta]. National Center for Biotechnology Information, Accession: UBI51324. https://www.ncbi.nlm.nih.gov/protein/UBI51324 Date: 09-28-2021 Herrera, S. 2021. mismatch repair protein, partial (mitochondrion) [Swiftia exserta]. National Center for Biotechnology Information, Accession: UBI51321. https://www.ncbi.nlm.nih.gov/protein/UBI51321 Date: 09-28-2021 Herrera, S. 2021. mismatch repair protein, partial (mitochondrion) [Swiftia exserta]. National Center for Biotechnology Information, Accession: UBI51322. https://www.ncbi.nlm.nih.gov/protein/UBI51322 Date: 09-28-2021 Herrera, S. 2021. mismatch repair protein, partial (mitochondrion) [Swiftia exserta]. National Center for Biotechnology Information, Accession: UBI51325. https://www.ncbi.nlm.nih.gov/protein/UBI51325 Date: 09-28-2021

Distribution 4

CC ID: 1183077

Start Date:	2021-07-01
End Date:	Present
Download URL:	https://www.youtube.com/channel/UC-lb30l-7e5QWcFbxVClE4Q/videos
Distributor:
File Name:	RESTORE Deepwater Corals Videos
Description:	Herrera, S. 2021. RESTORE Deepwater Corals. YouTube. https://www.youtube.com/channel/UC-lb30l-7e5QWcFbxVClE4Q/videos

Distribution 5

CC ID: 1183076

Start Date:	2021-06-11
End Date:	Present
Download URL:	https://doi.org/10.6084/m9.figshare.16692229.v4
Distributor:
File Name:	Model Data on figshare
Description:	Herrera, S. 2021. Datasets of "Population connectivity and seascape genomics of Paramuricea biscaya in the northern Gulf of Mexico". figshare. https://doi.org/10.6084/m9.figshare.16692229.v4

Distribution 6

CC ID: 1086636

Start Date:	2021-05-09
End Date:	Present
Download URL:	https://www.ncbi.nlm.nih.gov/
Distributor:	National Institutes of Health, National Center for Biotechnology Information, Gene Expression Omnibus (NIH NCBI GEO) (2020 - Present)
File Name:	Genetic Data
Description:	MT795558 MT795559 MT795560 MT795561 MT795562 MT795563 MT795564 MT795565 MT795566 MT795567 MT795568 MT795569 MT795570 MT795571 MT795572 MT795573 MT795574 MT795575 MT795576 MT795577 MT795578 MT795579 MT795580 MT795581 MT795582 MT795583 MT795584 MT795585 MT795586 MT795587 MT795588 MT795589 MT795590 MT795591 MT795592 MT795593 MT795594 MT795595 MT795596 MT795597 MT795598 MT795599 MT795600 MT795601 MT795602 MT795603 MT795604 MT795605 MT795606 MT795607 MT795608 MT795609 MT795610 MT795611 MT795612 MT795613 MT795614 MT795615 MT795616 MT795617 MT795618 MT795619 MT795620 MT795623 MT795624 MT795625 MT795621 MT795555 MT795622 MT795556 MT795626 MT795627 MT795557 MT795628 MT795629 MT795630 MT795631 MT795632 MT795494 MT795495 MT795496 MT795497 MT795498 MT795499 MT795500 MT795501 MT795502 MT795503 MT795504 MT795521 MT795505 MT795522 MT795506 MT795507 MT795508 MT795509 MT795510 MT795511 MT795512 MT795513 MT795534 MT795535 MT795514 MT795548 MT795542 MT795547 MT795536 MT795537 MT795538 MT795543 MT795549 MT795550 MT795551 MT795552 MT795553 MT795546 MT795545 MT795544 MT795554 MT795539 MT795540 MT795515 MT795490 MT795523 MT795516 MT795524 MT795525 MT795526 MT795517 MT795527 MT795518 MT795491 MT795492 MT795493 MT795519 MT795520 MT795528 MT795529 MT795530 MT795531 MT795532 MT795533 MT795541 QUQ73039 QUQ73040 QUQ73041 QUQ72974 QUQ72975 QUQ72976 QUQ72977 QUQ72978 QUQ72979 QUQ72980 QUQ72981 QUQ72982 QUQ72983 QUQ72984 QUQ72985 QUQ72986 QUQ72987 QUQ72988 QUQ72989 QUQ72990 QUQ72991 QUQ72992 QUQ72993 QUQ72994 QUQ72995 QUQ72996 QUQ72997 QUQ72998 QUQ72999 QUQ73000 QUQ73001 QUQ73002 QUQ73003 QUQ73004 QUQ73005 QUQ73006 QUQ73007 QUQ73008 QUQ73009 QUQ73010 QUQ73011 QUQ73012 QUQ73018 QUQ73019 QUQ73020 QUQ73021 QUQ73022 QUQ73023 QUQ73024 QUQ73026 QUQ73027 QUQ73028 QUQ73029 QUQ73030 QUQ73031 QUQ73032 QUQ73033 QUQ73034 QUQ73035 QUQ73036 QUQ73037 QUQ73038 QUQ73013 QUQ73014 QUQ73015 QUQ73016 QUQ73017 QUQ73025 QUQ73043 QUQ73044 QUQ73045 QUQ73046 QUQ73047 QUQ73048 QUQ73049 QUQ73050 QUQ73051 QUQ73052 QUQ73053 QUQ73054 QUQ73055 QUQ73056 QUQ73057 QUQ73058 QUQ73059 QUQ73060 QUQ73061 QUQ73062 QUQ73063 QUQ73064 QUQ73065 QUQ73066 QUQ73067 QUQ73068 QUQ73069 QUQ73070 QUQ73071 QUQ73072 QUQ73073 QUQ73074 QUQ73075 QUQ73076 QUQ73077 QUQ73078 QUQ73079 QUQ73080 QUQ73081 QUQ73082 QUQ73083 QUQ73084 QUQ73085 QUQ73086 QUQ73087 QUQ73088 QUQ73089 QUQ73090 QUQ73091 QUQ73092 QUQ73093 QUQ73094 QUQ73095 QUQ73096 QUQ73097 QUQ73098 QUQ73099 QUQ73100 QUQ73101 QUQ73102 QUQ73103 QUQ73104 QUQ73107 QUQ73108 QUQ73109 QUQ73105 QUQ73106 QUQ73110 QUQ73111 QUQ73112 QUQ73113 QUQ73114 QUQ73115 QUQ73116

Distribution 7

CC ID: 1086635

Start Date:	2020-08-11
End Date:	Present
Download URL:	https://www.ncbi.nlm.nih.gov/
Distributor:	National Institutes of Health, National Center for Biotechnology Information, Gene Expression Omnibus (NIH NCBI GEO) (2020 - Present)
File Name:	Genetic Data
Description:	Herrera, S. 2020. Muricea pendula isolate OP17-300 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial. National Center for Biotechnology Information, Accession: MN862696. https://www.ncbi.nlm.nih.gov/nuccore/MN862696 Herrera, S. 2020. cytochrome oxidase subunit 1, partial (mitochondrion) [Muricea pendula]. National Center for Biotechnology Information, Accession: QNC69440. https://www.ncbi.nlm.nih.gov/protein/QNC69440 Herrera, S. 2020. Swiftia exserta isolate OP17-343 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial. National Center for Biotechnology Information, Accession: MN862697. https://www.ncbi.nlm.nih.gov/nuccore/MN862697 Herrera, S. 2020. cytochrome oxidase subunit 1, partial (mitochondrion) [Swiftia exserta]. National Center for Biotechnology Information, Accession: QNC69441. https://www.ncbi.nlm.nih.gov/protein/QNC69441

URLs

URL 1

CC ID: 1086621

URL:	https://cdn.coastalscience.noaa.gov/restore/restore_tagbottom.png
Name:	RESTORE Science Program
URL Type:	Browse Graphic
Description:	RESTORE Science Program Logo

URL 2

CC ID: 1086622

URL:	https://restoreactscienceprogram.noaa.gov/projects/deepwater-corals
Name:	Deepwater Corals
URL Type:	Online Resource
Description:	RESTORE Research Project Webpage: Population Connectivity of Deepwater Corals in the Northern Gulf of Mexico

Activity Log

Activity Log 1

CC ID: 1089021

Activity Date/Time:	2021-09-30
Activity Type:	Distribution update
Responsible Party:	Jessica Morgan
Description:	Added 10 NCBI accessions

Data Quality

Completeness Report:	For details, see Distribution Information.
Quality Control Procedures Employed:	For details of data quality control methods, see Lineage Sources. All users should independently analyze the datasets according to their own needs and standards to determine data usability.

Data Management

Have Resources for Management of these Data Been Identified?:	No
Approximate Percentage of Budget for these Data Devoted to Data Management:	Unknown
Do these Data Comply with the Data Access Directive?:	Yes
Is Access to the Data Limited Based on an Approved Waiver?:	No
Approximate Delay Between Data Collection and Dissemination:	2 years
Actual or Planned Long-Term Data Archive Location:	Other
Approximate Delay Between Data Collection and Archiving:	2 years
How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?:	NCCOS IT Policy

Lineage

Lineage Statement:	This project will focus on four species of mesophotic and deepwater corals that were directly impacted by the DWH Oil Spill. The project aims to help guide management decisions by addressing crucial gaps in the understanding of the processes that influence population connectivity patterns of habitat-forming deepwater and mesophotic corals. The team will achieve this by combining field sampling, population genomic analyses, and physical oceanographic modeling to 1) define spatial scales of coral populations, 2) infer directionality and relative rate of genetic exchange among the coral populations, and 3) integrate predictive models of larval dispersal with genetic data to estimate dispersal distances and connectivity patterns.

Lineage Statement:

This project will focus on four species of mesophotic and deepwater corals that were directly impacted by the DWH Oil Spill. The project aims to help guide management decisions by addressing crucial gaps in the understanding of the processes that influence population connectivity patterns of habitat-forming deepwater and mesophotic corals. The team will achieve this by combining field sampling, population genomic analyses, and physical oceanographic modeling to 1) define spatial scales of coral populations, 2) infer directionality and relative rate of genetic exchange among the coral populations, and 3) integrate predictive models of larval dispersal with genetic data to estimate dispersal distances and connectivity patterns.

Acquisition Information

Instruments

Instrument Unavailable Reason:	Not Applicable

Platforms

Platform Unavailable Reason:	Not Applicable

Catalog Details

Catalog Item ID:	65516
GUID:	gov.noaa.nmfs.inport:65516
Metadata Record Created By:	Jessica Morgan
Metadata Record Created:	2021-09-20 14:05+0000
Metadata Record Last Modified By:	SysAdmin InPortAdmin
Metadata Record Last Modified:	2024-10-03 18:16+0000
Metadata Record Published:	2021-09-20
Owner Org:	NCCOS
Metadata Publication Status:	Published Externally
Do Not Publish?:	N
Metadata Last Review Date:	2021-09-20
Metadata Review Frequency:	1 Year
Metadata Next Review Date:	2022-09-20